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Open access

Research article

First published 2008

Centrality Analysis Methods for Biological Networks and Their Application to Gene Regulatory Networks

Dirk Koschützki, Falk Schreiber

Gene Regulation and Systems Biology

Open access

Review article

First published 2010

Computational Methodologies for Analyzing,Modeling and Controlling Gene Regulatory Networks

Zahra Zamani, Amirhossein Hajihosseini, Ali Masoudi-Nejad

Biomedical Engineering and Computational Biology

Retricted access

Research article

First published

Identifying Genes of Gene Regulatory Networks Using Formal Concept Analysis

Jutta Gebert, Susanne Motameny, Ulrich Faigle [...]

Journal of Computational Biology

Open access

Research article

First published 2010

Inference of Cancer-specific Gene Regulatory Networks Using Soft Computing Rules

Xiaosheng Wang, Osamu Gotoh

Gene Regulation and Systems Biology

Retricted access

Research article

First published 2004-05

Accelerating Gene Regulatory Network Modeling Using Grid-Based Simulation

James M. McCollum, Gregory D. Peterson, Chris D. Cox [...]

SIMULATION

Retricted access

Research article

First published 2011-5

Medusa structure of the gene regulatory network: dominance of transcription factors in cancer subtype classification

Yuchun Guo, Ying Feng, Niraj S Trivedi [...]

Experimental Biology and Medicine

Retricted access

Research article

First published 2006-11

A General Modeling Strategy for Gene Regulatory Networks with Stochastic Dynamics

Andre Ribeiro, Rui Zhu, Stuart A. Kauffman

Journal of Computational Biology

Open access

Review article

First published 2024

Approaches for Benchmarking Single-Cell Gene Regulatory Network Methods

Karamveer, Yasin Uzun

Bioinformatics and Biology Insights

Open access

Research article

First published 2015

In Silico Gene Regulatory Network of the Maurer's Cleft Pathway in Plasmodium falciparum

Itunuoluwa Isewon, Jelili Oyelade, Benedikt Brors [...]

Evolutionary Bioinformatics

Retricted access

Research article

First published 2007

Transcriptional Regulatory Networks via Gene Ontology and Expression Data

Kagan Tuncay, Lisa Ensman, Jingjun Sun [...]

In Silico Biology

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