Abstract
Introduction
Microglia are the resident tissue macrophages of the CNS and are cells that belong to the innate immune system. Since its discovery, the immunological role of macrophages have focused on their phagocytic activity (Tauber, 2003) which is central not only for host defense but also for various housekeeping functions, such as the removal of apoptotic cells and the remodeling of the extracellular matrix (ECM). Ongoing research has started to point out a much more general role of macrophages in vertebrate biology, including their roles in cold adaptation, systemic metabolism, tissue homeostasis and development (Gordon et al., 2014; Wynn et al., 2013). The normal development and function of some tissues and organs is critically dependent on macrophages that reside in these organs (Gordon et al., 2014; Wynn et al., 2013), microglial cells in CNS. As with any other tissue macrophage, microglia were considered to be in a resting state in the healthy CNS, while CNS infection and inflammation caused activation of these cells to a professional phagocyte that either resolves these situations, or potentially induces a pathological process. Here, we will briefly discuss the homeostatic functions of microglia and the impact that microglia have in the well-being of the different CNS cells. Moreover, we will summarize the current state of art of the never resting microglia, focusing on how microglia immune activation upon infection creates an inflammatory milieu that while defending CNS from invading pathogens can damage surrounding tissues.
The Surveying Never Resting Microglia Keeping the Homeostatic State of the CNS
Microglia have important homeostatic functions in the adult CNS (Hanisch & Kettenmann, 2007; Tremblay et al., 2011). This cells participate in CNS development and homeostasis by regulating neural cell numbers, migration of interneurons, as well as promoting connectivity, synapse formation, and pruning (Thion et al., 2018) (Figure 1). Also, microglia are considered the first line of immune defense in the brain by monitoring the brain parenchyma under homeostatic conditions and resolving cerebral insults (Aloisi, 2001). This multifunctional task is accomplished by performing four major defined functions: i) phagocytosis of apoptotic neurons, ii) trophic support of developing neurons and other cells glial cells, iii) guidance of the developing vasculature of the CNS, and iv) support and refinement of developing neural circuits (Figure 1). The main mechanisms for these functions are phagocytosis and cell-to-cell communication through direct intercellular contacts or via soluble mediators.

Physiological functions of microglia. (A) Phagocytosis of apoptotic neurons. Apoptotic neurons release “find-me” signals which attract microglia and expose in their surface “eat-me” signals stimulating microglial phagocytosis. (B) Phagocytosis of viable neural progenitor cells. Microglia phagocytoses viable neural progenitor cells in a direct manner, without inducing apoptosis. (C) Trophic support of proliferation, survival and differentiation of neural and other glial progenitor cells. Microglia secrete trophic factors that promote neurogenesis, astrogenesis and oligodendrogenesis. (D) Refinement of synaptic formation and pruning. Microglia regulate the extension of synaptic networks through phagocytosis during CNS development, as well as in the adult CNS.
Microglia contributes substantially to adult neurogenesis at several areas of the healthy CNS (Norris & Kipnis, 2019; Sato, 2015; Sierra et al., 2014). Neurogenesis is influenced by microglia by exerting suppressive (Figure 1 A, B) or supportive functions (Figure 1 C, D). Microglia can also contribute to neural repair and regeneration through phagocytosis and the production of immune-regulatory mediators such as IL-1β, IL-6, TNF-α and interferon (IFN)-γ, as well as neuronal growth factors such as insulin-like growth factor 1 (Figure 1 C-D) (Lannes et al., 2017). In addition, microglial cells stimulate the formation of new spines in the cortex by secreting brain-derived neurotrophic factor (Parkhurst et al., 2013) (Figure 1 D). Interestingly, the commitment of microglial specific pathways could also drive the modulation of synaptic activity. For instance, fractalkine signaling pathway regulates excitatory synaptic transmission and plasticity (Rogers et al., 2011) but also Toll-like receptor (TLR) 4 signaling controls glutamate release of presynaptic fibers through the astrocyte mobilization (Pascual et al., 2012). These findings have led to the contention that microglial cells scrutiny but also control synaptic and neuronal activity in the healthy adult brain (Tremblay et al., 2011). These observations also suggest that the profound changes in microglia phenotype that take place upon the occurrence of an infection or a pathological condition will have two consequences: i) the loss of the constitutive influence of surveying microglia on homeostasis and ii) the emergence of new functions related to the immune nature of these cells.
Immune Functions of Microglia
Immune Receptors of Microglia
Microglia recognize a wide array of pathogens that can invade the CNS as bacteria, viruses, parasites and fungi. They are armed with a vast repertoire of pattern recognition receptors (PRRs) that include mainly TLRs and Nod-like receptors (NLRs); along with a vast array of phagocytic receptors, which function together to sense and eliminate microbes that invade the CNS parenchyma. PRRs sense pathogen-associated molecular patterns (PAMPs) which are highly conserved microbial motifs, such as lipopolysaccharide (LPS) or viral nucleotides, as well as danger-associated molecular patterns (DAMPs) such as amyloid (Aβ) or cytosolic proteins released from necrotized cells; and as a result, they elicit the production of inflammatory mediators from microglia (Hanamsagar et al., 2012). TLRs detect PAMPs expressed on a wide variety of microbial pathogens (Kawai & Akira, 2010). Most of TLR engagement leads to the recruitment of MyD88 and subsequent NF-κB and MAPK-mediated transcriptional activation of inflammatory mediators (Brown et al., 2011) (Figure 2A). NOD-like receptors (NLRs), particularly NLRP1, NLRP3, and NLRC4 in microglia, are cytoplasmic receptors that oligomerize to form a platform known as inflammasome, a multi-protein complex that finally cleaves pro-IL-1β and pro-IL-18 into their mature forms via caspase-1 (CASP-1) action. Among them, the most abundant inflammasome present in the CNS is NLRP3 (Katuri et al., 2019). Both, TLRs and inflammasomes receptors act in concert in a two-signal model. Ligand binding to TLR induces the expression of pro-IL-1β and pro- IL-18, after which NLR-dependent activation of CASP-1 regulates their proteolytic processing and release (Franchi et al., 2009) (Figure 2B). Cytosolic double-stranded DNA can also activate an innate immune response. It is recognized by GMP-AMP synthase (cGAS) (Paludan & Bowie, 2013), which produces cyclic-GMP-AMP (cGAMP), a second messenger, which in turn activates downstream STING. This signaling pathway ultimately leads to IFN-β production via IRF-3 (Sun et al., 2013) (Figure 2C).

Microglial immune receptors. Microglia recognize, through different pattern recognition receptors (PRRs), microorganisms that are capable of invading the CNS parenchyma. (A) Toll-like receptors (TLR) sense PAMPs expressed in microorganisms. TLR activation leads to the enrollment of the adaptor MyD88 and the consequent activation of MAPK that triggers the translocation to the nucleus of the transcription factor NF-κB, promoting the expression of many inflammatory cytokines and the precursor forms of IL-1β and IL-18. (B) Nod-like receptors (NLR) are cytosolic receptors that oligomerize, and together with adaptor proteins form the inflammasome. This multi-subunit complex activates caspase 1 (CASP-1) enzyme, which produce the proteolytic cleavage of pro-IL-1β and pro-IL-18 to their mature forms that are then released to the extracellular milieu. (C) GMP-AMP synthase (cGAS) is a cytosolic receptor that recognizes double-stranded DNA. The activation of cGAS produces the second messenger cGAMP, which binds to STING in the ER and promotes downstream IFN-β expression via IRF-3.
Phagocytosis is a well-controlled process that requires the activation of several non-redundant signaling pathways that recognize different molecules on the target cell surface (Ravichandran, 2011) (Figure 3). These molecules, also called “eat-me” signals, are recognized directly by phagocytic membrane receptors, or by the interaction with bridge proteins, that are then recognized by a phagocyte receptor. Phosphatidylserine (PS) is one of the best characterized “eat-me” signal. It normally resides in the inner leaflet of cell plasma membrane, but it is exposed on the surface of apoptotic or damaged cells (Ravichandran & Lorenz, 2007). This exposed PS binds to its receptors or connective molecules and triggers phagocytosis on macrophages, including microglia. Two receptors that recognize PS have been identified: TIM4 and BAI. In addition to this, various adaptor molecules facilitate ingestion of cells through PS binding: Gas6, MFG-E8, β2-GPI and annexin V (Sierra et al., 2013). The connective molecules are bridge proteins with two binding domains, the first one binds to PS and the other one binds the phagocyte receptor (Li, 2012). One of the best characterized bridge PS-binding protein is MFG-E8 (lactadherine), which recognizes PS through its C-terminal domain and binds to integrins αvβ3 or αvβ5 (vitronectin receptor, for example) through N-terminal RGD motifs (Akakura et al., 2004). Another signaling pathway that initiates phagocytosis involves the recognition of N-acetyl-lactosamine by Galectin 3 (Gal-3), which is secreted by activated phagocytes and binds to MerTK receptor. This important phagocytic receptor belongs to the family of tyrosine kinase receptors TAM that was recently involved in phagocytosis of neurons by microglia (Nomura et al., 2017).

Microglial phagocytic receptors. Microglia express several membrane phagocytic receptors that recognize different target molecules (“eat-me” signals) on apoptotic or live damaged neurons. The recognition can be direct or mediate by the interaction with bridge molecules. LacNac, N-acetyl-lactosamine; PE, phosphatidylethanolamine.
In addition to non-protein molecules, membrane-bound proteins can act as “eat-me” signals. The expression of calreticulin is increased in apoptotic or damaged cells, which leads to its recognition by the LRP receptor (low-density lipoprotein receptor-related protein, CD91), although phagocytosis mediated by this route seems to depend on the exposure of PS in the damaged cell (Fricker et al., 2012a; Gardai et al., 2005). Other receptors that have been reported to be involved in phagocytosis are mannose receptors, scavenger receptors, sialic acid binding immunoglobulin-like lectins (Siglecs) and TREM-2. The last one can bind to LPS, peptidoglycan, lipotheicoic acid (LTA), and other molecules that they have repeated anionic residues (Daws et al., 2003; Wang et al., 2015; Yeh et al., 2016). Recently, it was described that TREM-2-dependent signal transduction in response to apoptotic neurons is mediated by aminophospholipid ligands, PS and phosphatidylethanolamine, which are exposed on apoptotic cells (Shirotani et al., 2019). Activation of TREM-2 led to phagocytosis of apoptotic cell debris (Fu et al., 2014). Other receptors involved in the fine regulation of phagocytosis are the FcγR and the complement receptors. FcγR (I, II and III) bind the constant fragment of immunoglobulins. Complement receptors CR1, CR3, and CR4 bind the component C3bi, while C1qRp binds C1q (Aloisi, 2001). Activation by ligands of CR1, CR3 and FcγR trigger phagocytosis of opsonized targets
On the other hand, microglia also express siglecs receptors, which bind to sialilated ligands on neurons or CNS tumor cells (Linnartz-Gerlach et al., 2014), modulating the activation of microglia and thus also phagocytosis activity. Microglial phagocytosis also is modulated by LRP, signal-regulatory protein alpha (SIRPα, CD172a) and TREM-2 (Gitik et al., 2011; Hadas et al., 2012; Yang et al., 2016).
Other kind of receptors, the purinergic receptors, recognize chemotactic signals called “find me” signals. Professional phagocytes, as microglia, are mobile and are constantly patrolling tissues in search of dead or damaged cells. ATP and UDP nucleotides are the best characterized “find me” signals released by damaged cells (Ravichandran, 2011). ATP and UDP released by these cells generate a gradient for microglial chemotaxis that recognizes them through their purinergic receptors. P2Y6, P2Y12, P2X4 and P2X7 are expressed by microglia. ATP and UDP are agonists of P2Y6. UDP-stimulated microglia changed their morphology extending microglial processes, filopodia-like protrusions and phagosome-like vacuoles, increasing the phagocytosis activity (Koizumi et al., 2007). P2Y12 and P2X7 receptors are responsible of ATP responses. Using KO mice of both receptors it was showed that P2Y12 is involved on microglia recruitment
The Positive side of Microglial Immune Responses
After pathogen ingress through the endothelial barrier, microglia are the first line of defense (Forrester et al., 2018). In response to pathogeńs infection, activated microglia produce pro-inflammatory mediators, including NO/ROS, cytokines and chemokines; and increase their phagocytic activity. One immune key role of microglia activation during CNS infection is the recruitment and subsequent activation of infiltrating immune peripheral cells, such as granulocytes (neutrophils, eosinophils, and basophils), monocytes and lymphocytes, The recruitment of these inflammatory cells is the most common manifestation of neuroinfectious diseases, which mediate local resistance to viral, bacterial and parasitic organisms within CNS (Klein & Hunter, 2017). Most data on activated microglia is about the immunopathology caused by these cells during activation, but this immune response can be also beneficial to the host, executing the control and clearance of the pathogen.
Microglia can be infected by several virus such as herpes simplex virus (HSV) (Chen et al., 2019), human immunodeficiency virus type 1 (HIV-1) (Chen et al., 2019) and Zika virus (ZIKV) (Lum et al., 2017), among others. Virus-activated microglia have shown to play an important role in immune defense against viruses. Mice infected with HSV show an increase of microglia number at 6 days post-infection. These microglia surround HSV-infected neurons. Stressed infected neurons seem to release ATP since it has been described that there exists a reduction of more than 50% in the numbers of microglia recruited to infected neurons when P2Y12 KO mice were employed, indicating that microglia are recruited around the infected neurons via P2Y12 signaling. Interestingly, P2Y12-deficient microglia has a decreased amount of CD68+ phagolysosomes compared with normal mice, which indicates that P2Y12 is essential for the phagocytic activity of microglia (Fekete et al., 2018). This phenomenon was also present in human patients. Brain specimens of patients with HSV encephalitis shows that P2Y12-positive microglia processes extend to HSV-positive neurons, and there are many activated microglia around each infected neuron (Fekete et al., 2018). The same study demonstrated
The mouse model of vesicular stomatitis virus (VSV) encephalitis demonstrated that infected microglia produce type I IFN and activate innate immunity which limits the trans-synaptic spread of VSV (Drokhlyansky et al., 2017). Interestingly, the same model has shown that upon intranasal VSV infection activated microglia aggregate in the olfactory bulb. It was shown that microglia accumulating around the olfactory bulb form a natural immune barrier that plays a critical role in limiting the spread of VSV in the CNS and prevents lethal encephalitis. VSV-infected mice have higher viral load in microglia-depleted brain and display higher mortality, indicating that microglia is crucial to limit the spread of VSV (Chhatbar et al., 2018). Also, early depletion of microglia in a model of murine hepatitis virus resulted in increased mortality while later depletion (after six days post-infection) had no influence on survival (Wheeler et al., 2018).
Cytomegalovirus-activated microglia suppresses viral replication in astrocytes by secreting IFN-γ and TNF-α, also attract T-cell by CXCL10/IP-10 action (Rock et al., 2004). Interestingly, single-cell analysis of neuro-inflammatory responses following intracranial injection of rabies viruses have revealed distinct states of microglia activation that may serve different functions, which range from surveillance to antigen presentation and cytokine secretion. Among the later, antiviral responses are orchestrated by Type I and Type II IFN signaling from microglia (Huang & Sabatini, 2020). Microglia can also affect the adaptive immune response of the CNS. Depletion of microglia changes the response of CD4+ T cell to viral infection in the brain, since MHC II is required for re-stimulation and activation of CD4+ T cells. A decrease in MHC II as a result of microglial depletion has been shown to reduce the response of virus-specific CD4+ T cells (Wheeler et al., 2018). Also, during dengue virus infection it has been described a reduced CD8+ T cell response and increased viral replication as a consequence of pharmacological deletion of microglia, demonstrating a functional role for microglia in modulating this cell population (Tsai et al., 2016).
With respect to bacterial infections,
Microglia has also been vindicated as an active participant in host defense against parasites that invade CNS. In the murine model of toxoplasmosis microglia are strongly activated, showing up-regulation of MHC class I and II molecules, and other antigens such as CD200, CD11a, CD11b; and secrete cytokines and chemokines (Schluter & Barragan, 2019). Once in the CNS, CD4+, CD8+ T-cells and NK cells, work together with microglia to suppress
Infection with
Finally, microglia play a key role in limiting neuroinflammation. Microglia can produce IL-27 in the inflamed CNS. In IL-27 absence, mice infected with different pathogens as
When Friends Become Enemies: Harmful Consequences of Pathogen-Activated Microglia on Cells of the CNS
Whatever the pathogen and the receptor involved in its recognition, the activation of the microglia leads, not only to the defense and elimination of the pathogen itself, but also to the damage of brain tissue and cells. Thus, beyond their roles in physiological conditions, microglia contribute to neuroinflammation in response to injury, stroke and infection (Aloisi, 2001; Kugler et al., 2021). They act as primary initiators of the inflammation cascade by increased reactivity and the secretion of factors such as chemokines (Karve et al., 2016).
Changes in Permeability and BBB Disruption due to Pathogen Activation of Microglia
BBB integrity is necessary to protect the brain from systemic toxins and germs, as well as to maintain the necessary level of nutrients for normal neuronal function. BBB activation or dysfunction is a significant contributor to the pathogenesis of a variety of brain pathologies (Almutairi et al., 2016).
Pro-inflammatory cytokines secreted by pathogen-activated microglia, as TNF-α, IL-1β and IL-6, act on the BBB activating endothelial cells (EC), leading to disruption of homeostasis and increasing its permeability. They also cause MMP secretion. MMPs have been implicated in inflammatory tissue destruction in several pathological situations in different tissues, including CNS. These proteins can act directly breaking the junctions between EC. Moreover, MMP-9 can degrade type IV collagen, laminins and fibronectin, which are structural components of the BBB and CNS tissue matrix, increasing BBB permeability as a consequence (Novak & Kaye, 2000). BBB disruption occurs in patients suffering cerebral malaria (CM) leading to severe neurological complications like intracerebral hemorrhage and intracranial edema, which finally resulted in axonal damage, CNS dysfunction and death (Brown et al., 2001; Nishanth & Schluter, 2019). One cause of the BBB damage is the excessive intracerebral inflammation resulting from pro-inflammatory cytokine response. It has been suggested that ECs are directly activated by recognizing
We have described that microglia and astrocytes release MMP-9 in response to
Microglia secrete NO in response to different pathogens such as
Finally, direct LPS treatment of ECs monolayer showed no effect on permeability, however, when the LPS treatment was performed on co-cultures of ECs plus microglia, permeability was increased and this was dependent on the amount of microglial cells in culture (da Fonseca et al., 2014). In support of this, LPS-activated microglial disrupt tight junction proteins ZO-1 and claudin-5, decreasing trans-endothelial electrical resistance of an endothelial monolayer
Detrimental Effect of Pathogen-Activated Microglia on the Neurovascular Unit.
ECM: extracellular matrix.
EC: endothelial cells.
Neuronal Demise Induced by Pathogen-Activated Microglia
There are different reports describing several inflammatory mechanisms generated by microglia in response to an infectious process that induce neuronal death instead of host defense. First, neuronal damage can be induced by microglia-released factors. It was described neuronal loss as a consequence of microglia release of factors such as NO (Chao et al., 1992; Dawson et al., 1991; Lehnardt et al., 2006), IL-1β, IFN-γ (Hu et al., 1997), TNF-α (Medana et al., 2000; Takeuchi et al., 2006; Venters et al., 2000), MMPs (Thornton et al., 2008) and others. Lehnardt and collaborators have deepened the study, describing neuronal apoptosis generated by microglia-secreted NO by TLR2-recognition of Group B
Cell-to-cell contact is another important factor that has been vindicated in the induction of neuronal death by activated microglia (Myers et al., 2009; Neher et al., 2012; Rodriguez et al., 2017). This is the case of neuronal apoptosis mediated by microglia activated by

Microglial primary phagocytosis or phagoptosis. Pathogen-activated microglia increase their phagocytic activity and secrete several pro-inflammatory mediators. These mediators induce the expression of “eat-me” signals on live neurons. The exposure of these signals in viable damaged neurons triggers neuronal death by microglial primary phagocytosis.
Recently, we have demonstrated
Finally, it has been demonstrated that phagocytosis of neurons by microglia also requires the release of “find-me” signals such as neuronal UDP/ATP. Both, nucleosides and nucleotides of adenine and uridine, can function as extracellular signals inducing a change in the microglia from migratory to phagocytic phenotype; causing the formation of the so-called phagocytic cup (the membrane invagination around the target cell) and enabling neuronal ingestion (Koizumi et al., 2007). Their action is mediated by purinergic receptors capable of modulating a wide variety of responses, such as inflammatory response, insulin secretion, vascular tone regulation, among others (Lazarowaki & Schwarzbaum, 2009). It has been shown that cell phagocytosis requires activation of these signaling pathways (Ravichandran, 2011). In particular, it has been described that in the final stage of phagocytosis of neurons by microglia the release of UDP by the target cell is required to change the phenotype of microglia from a migratory profile towards a phagocytic profile (Bernier et al., 2013; Koizumi et al., 2007). UDP released from damaged neurons induces adjacent microglia to phagocyte them through the P2Y6 receptor. More recently, it has been shown that this signaling pathway is also involved in the recognition and subsequent phagocytosis of live neurons. Microglia activated by LPS or LTA (TLR4 and TLR2 ligand, respectively) phagocytose live neurons and this phenomenon was inhibited by MRS2578, a specific inhibitor of P2Y6 receptor (Neher et al., 2014).
Oligodendrocytes and Astrocytes Alterations Induced by Pathogen-Activated Microglia
Oligodendrocytes are susceptible to be damaged by microglia-derived factors as glutamate, TNF-α, IL-1β and NO among others, particularly because of their high metabolic activity and energy demands. As consequence of this damage, they produce a poor quality myelin, which may contribute to the pathology observed in CNS infection diseases (Peferoen et al., 2014). Intracerebral injection of LPS lead to activation of astrocytes and microglia. Both type of cells produce pro-inflammatory cytokines, that lead to hypo-myelination (Pang et al., 2003).
Recently, it has been described the ability of LPS-activated microglia to induce a kind of reactive astrocytes named A1. This phenomenon was induced by microglia-secreted IL-1α, TNF-α and C1q in concert. These astrocytes lose the ability to promote neuronal survival and, on the contrary, lead to neurons and oligodendrocytes to death (Liddelow et al., 2017). In addition, it was recently reported the involvement of the IL-33 in mice suffering experimental CM. It was demonstrated that astrocytes and oligodendrocytes secrete IL-33 in hippocampus at 7 days post-infection with
Concluding Remarks
Most of the information gathered to present has come from the acknowledgment of microglia as being the resident macrophages of the CNS and the recently discovered evidences of the homeostatic functions of tissue macrophages, despite their traditional immune functions (Gordon et al., 2014; Wynn et al., 2013). Considering the skills of microglia to remodel their phenotype according to environmental signals, they can be considered as the most plastic cell type of the CNS, acting as immune “double-edge swords” either bringing benefits and defense to the CNS or causing immunopathology. An important aspect that this review has brought into attention is that the molecular tools (immune receptors, neurotropic factors, inflammatory mediators, etc.) that microglial cells use to perform “good and evil” are practically the same. During development and in the adult CNS the particular phenotype that microglia adopt is related to environmental cues that these cells received from other cells (astrocytes, neurons, ECs, etc.), microbes or spatio-temporal tissue profiles.
Much of the information we have learnt from the harmful function of microglia have aroused from studies on neurodegenerative diseases and stroke but less is known about the damage that microglia inflict to the CNS cells when is activated by a pathogen. It has come to the attention of the field that there exist a functional diversity of microglia (Sankowski et al., 2019) and not a single uniform population of microglial cells in the CNS. Thus, it might be possible that thorough investigations on how different subpopulation of microglia respond to infection allow showing such a diversity.
