Abstract
Introduction
According to a recent report, 1 in 2015 globally, an estimated 71 million people were living with chronic hepatitis C infection accounting for 1% of the world population, with only 20% knowing their infection status. Mortality was still increasing and an estimated 1.75 million new HCV infections occurred worldwide in 2015. Infection with HCV becomes chronic in most infected persons and a person may be infected with HCV for as long as 30 years or more before developing any clinical symptoms of disease and 20% or more develop life-threatening end-stage chronic liver disease, such as cirrhosis or hepatocellular carcinoma. In 2015, HCV led to 411,000 deaths.
The research for more effective HCV treatments has developed and advanced significantly in the recent years and the focus on direct-acting antiviral agents (DAAs) and specially nucleotide prodrugs having a broad genotypic coverage and high barrier to resistance have emerged as the best promise for backbone combination to eradicate HCV in the next decade.
Nucleo(s)tide prodrugs are pharmacologically inactive modified analogs able to be transformed in vivo to their parent nucleo(s)tide via metabolic or chemical processes occurring in the body. For the purpose of clarity, I will here use under the generic “prodrug” term only “carrier prodrugs” (covalently bound chemical entity releasing the “drug” by hydrolytic cleavage at the target site) and not bioprecursors (chemical entity metabolized into the pharmacologically active entity) as defined elsewhere. 2
This review will cover the different main current and future prodrugging strategies used with the more significant reported active nucleo(s)tides which landmark the field of HCV. Comprehensive reviews of nucleos(t)ide prodrugs have been reported elsewhere.3–9
A-nucleoside prodrugging
Both nucleosides and nucleotides can be prodrugged depending on the shortcoming properties one wants to overcome.
Nucleoside prodrugging is performed on a nucleoside that can be efficiently metabolized to its active triphosphate (TP) in order to overcome bioavailability or tissue targeting shortcomings. The more common oral bioavailability issues are usually due to lack of
permeation through biological membranes (lipophilicity is too low) and the prodrug design will mask or counterbalance the polar functions of the parent nucleoside (e.g. solubility, which is less common with nucleoside analogs, but can be mitigated by prodrugging with polar or ionizable pro-moieties (e.g. valine esters);
Addressing tissue targeting topics can be more complex as the required enzymatic pro-moiety cleavage in a specific tissue can be different from one parent nucleoside analog to another as well as species dependent.
The first nucleoside prodrug evaluated in clinical trials for HCV was NM283 from Idenix (Figure 1), a 3′-

First clinical stage nucleoside prodrugs. (a) Valopicitabine (NM283), (b) Balapiravir (R1626), and (c) Mericitabine (R7128).

Other first generation prodrugs followed with Balapiravir and Mericitabine, both tri- and di-
None of these first generation nucleoside prodrugs led to sufficient clinical benefit to allow approval of a simple nucleoside prodrug, because daily dose normalized viral load reductions were too low (Table 1). 25
Clinical dose efficiency of HCV nucleoside and nucleotide prodrugs.
HCV: hepatitis C virus.
aGenotype 1 patients.
B-nucleotide prodrugging
On the other hand, nucleotide prodrugging is usually performed to overcome 5′-monophosphorylation problem or to improve liver targeting. As opposed to nucleoside prodrugging, the advantage in HCV activity of a 5′-monophosphate prodrug can be demonstrated in cell culture experiments as shown in Table 2.
HCV activity in cell culture experiments.
HCV: hepatitis C virus; NR: Not reported.
aGenotype 1b replicon assay.
bFold change EC50 nucleoside/EC50 prodrug activity (improvement of the prodrug versus parent nucleoside).
SATE-phosphoramidate prodrugs
The first clinical proof of concept for such kind of nucleotide prodrugs was reported by Idenix with the discovery of IDX184 (Scheme 1).40,41 Other nucleotide prodrugs were then reported based on the 2′C-Me well-known sugar backbone with different prodrug moieties giving various improvements over the parent nucleoside.

SATE IDX184 nucleotide prodrug and its proposed decomposition pathway.
IDX184 is a benzylamine/“SATE” phosphoramidate prodrug which benefits from a thioester enzymatic cleavage liberating the corresponding carboxylic acid and the 2-thioethyl side chain which undergoes self emulating cleavage. 42 While ethylene sulfide was proposed as a cleavage metabolite, it has been shown that this metabolite was not found in vivo, but glutathione adduct was instead formed. 43 The benzylamine phosphoramidic acid is further cleaved by a phosphoramidase to yield the 5′-monophosphate. 31 Further metabolism by cellular kinases gives the active corresponding TP (Scheme 1).
IDX184 improved dramatically the clinical dose efficiency as over a two weeks once a day 100 mg dose treatment, HCV viral load reduced by 2.7 log
11
giving one of the highest viral load reduction efficiency per gram of drug at 27 (Table 1). However, IDX184 suffered from dose-limited absorption as seen in the dose escalation nonlinearity Cmax.
44
IDX184 clinical development was stopped as a consequence of BMS-986094 severe cardiac side effects, both compounds sharing the same active Nuc-TP in vivo (vide infra).
2. McGuigan prodrugs
GS-7977 (Sofosbuvir) is a McGuigan phosphoramidate prodrug (
The first step involves hydrolysis of the carboxylic ester by cathepsin A (Cat A) and carboxylesterase 1 followed by an intramolecular cyclization of the carboxylate on the phosphorus atom, displacing the phenolate and followed by water hydrolysis of the unstable cyclized intermediate to yield the alanyl phosphoramidic acid metabolite which is further hydrolyzed by the enzyme hHint 1 to the nucleoside-monophosphate (NMP). In the case of GS-7977, this NMP is then phosphorylated by UMP-CMP kinase to its nucleoside-diphosphate (NDP), and final phosphorylation by Nucleoside DiPhosphate Kinase (NDPK) affords its nucleoside-triphosphate (Scheme 2).

McGuigan prodrug metabolism.
BMS-986094 is a McGuigan prodrug that was designed to improve in vitro activity in the replicon assay owing to an increase of the lipophilicity by using a naphthol in place of the usual phenol, substituting the shorter
Three other McGuigan prodrugs still in clinical development are AL-335, ACH-3422, and MIV-802 for which little preclinical data have been reported but for which the HCV replicon activity is similar or slightly better than Sofosbuvir (Table 2). The early virologic load decrease in patients is much less efficient than Sofosbuvir (Table 1) for the first two more advanced candidates (AL-335 and ACH-3422), and it was recently announced that AL-335 would not be developed further in combination.
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Although one cannot exclude that MIV-802 or ACH-3422 could potentially progress further in combination with other DAAs.
3. Cyclic phosphotriester (CPO) prodrugs
The 3′,5′-CPO prodrug structural unit shows possible significant improvements on the medicinal chemistry perspective, allowing smaller molecular weight and therefore better ligand efficiency as well as lower number of rotational bonds which, with the former property, may both provide enhanced passive diffusion through cell membrane. Both GS-0938 and IDX19368 (Figure 3) are actually double prodrugs as they bear the ethoxy masking group on the 6-guanine base position allowing a better solubility of these guanosine derivatives. The in vivo metabolism was studied in the case of GS-0938 and is described in Scheme 3. It involves a first oxidative cleavage by cytochrome (CYP3A4), followed by opening of the cyclic 3′,5′-phosphodiester (CPOH) by phosphodiesterase, the last step being the hydrolysis of the 6-ethoxy guanine prodrug by adenosine deaminase-like protein 1. 55

Clinical and preclinical 3′,5′-CPO prodrug. (a) GS-0938 (

CPO prodrug metabolism.
4.
IDX21437 is a

5. Other miscellaneous prodrugs
Other HCV nucleotide prodrugs were reported in early discovery studies as CC-1845 from Cocrystal, for which the structure is unknown but likely a McGuigan prodrug of 2′C-Me-2,6,-disubstituted purine analog. However, recently the company has declared that preclinical studies indicated higher than acceptable toxicity and have now switched to a backup compound CC-2850. 56
Conclusion
From the first nucleosides through the first generation of their prodrugs to the second generation of nucleotide prodrugs demonstrating increasing added value of liver targeting in HCV, no new simple nucleosides or their prodrugs would be further developed but favoring their nucleotide prodrugs as can be seen by the latest candidates in discovery or ongoing clinical evaluation. With the knowledge gathered by the different metabolism pathways of pro-moieties, future nucleotide prodrugs will be designed toward more elaborated and tissue targeted drugs with single or multiple prodrugs and possible combinations of the above well characterized and main classes of prodrugs as can be already seen in recent patent applications in the HCV and other disease areas. I can envision for the future of HCV nucleos(t)ide drugs better liver targeting based on more specific liver metabolism, compared to other tissues as exemplified by IDX21437, rather than first path metabolism effect as observed in the earlier
