Abstract
Introduction
Rheumatoid arthritis (RA) is a chronic, systemic autoimmune inflammatory disorder. 1 It has a predilection for affecting women over the age of 40. 2 On a global scale, the prevalence of RA ranges from 0.25% to 1%. 3 In recent years, due to the development of novel therapeutic approaches, significant progress has been made in the treatment and prognosis of RA. However, this has also shifted the focus toward the management of complications associated with the disease. Before effectively managing these complications, a comprehensive understanding of the complications that RA patients may develop is essential. Previous research has indicated that RA can have an impact on multiple systems, such as the cardiovascular system, diabetes, respiratory system, and nervous system, among others. 4 Gaining a full understanding of the complications caused by RA can contribute to the formulation of more optimized treatment strategies for RA patients.
Both lung diseases and RA are prevalent conditions that can cause significant disability.5,6 They share common pathogenic pathways, such as tobacco use and pulmonary inflammation. The influence of respiratory conditions, particularly chronic obstructive pulmonary disease (COPD), on RA has been observed. Conversely, RA may also be one of the risk factors for the development of COPD. A review has reported that RA increases the risk of COPD (odds ratio (OR) = 1.41, 95% confidence interval (95% CI): 1.13–1.76,
Mendelian randomization (MR) is a powerful analytical method for elucidating the causal relationship between an exposure and an outcome. 12 It uses genetic variants to infer exposure, which can effectively minimize confounding bias. In the past, MR has been widely applied in the discovery of disease biomarkers and complications. Indeed, with advances in MR techniques, there is growing research interest in investigating the underlying causal relationships between comorbid conditions. Thus, MR has become a key methodological tool that makes it feasible to investigate causal links between distinct diseases. For example, Ryszkiewicz et al. explored the causal effects of ADHD and autism on cardiovascular disease risk. 13 Another study also reported the causal associations between type 2 diabetes and various cancers using MR techniques. 14 It has successfully helped to identify the causal relationships between RA and various factors such as peripheral artery disease, osteoporosis, etc.15,16 Nevertheless, to date, there has been no comprehensive MR analysis exploring the relationship between RA and lung diseases. Therefore, the aim of our study is to investigate the relationship between RA and common lung diseases, including asthma, COPD, ILD, and LC.
Methods
Study design
This study encompassed four outcomes, namely: (1) asthma; (2) COPD; (3) ILD; and (4) LC. Three MR methods were employed to examine the causal relationships between RA and these four outcomes in both Asian and European populations. 17 The overall study framework is presented in Figure 1. For a convincing causal relationship to be established, it must adhere to the three fundamental MR assumptions: relevance, exchangeability, and exclusivity. Specifically, the instrumental variables (IVs) should exhibit a strong correlation with the exposure factor; the causal connection between the IVs and the outcomes should occur solely through the exposure factor; and the causal relationship between the exposure and the outcome should not be distorted by confounding factors. When all these assumptions are satisfied, MR can serve as a powerful tool for uncovering causal relationships. Our study was reported in accordance with the guidelines for MR reporting. 18

Study design of a Mendelian randomization study of rheumatoid arthritis on lung diseases.
GWAS data for the exposure
Regarding the East Asian population, the data on RA were obtained from the Biobank of Japan with the access code bbj-a-151. The data can be downloaded from the website of the Biobank of Japan as well as the IEU GWAS Catalog. In total, 212,453 participants were recruited, among whom 4199 were diagnosed with RA.
For the European population, the data on RA were sourced from the IEU GWAS Catalog with the access code ieu-a-832. Altogether, 58,284 participants were enrolled, and 14,361 of them were diagnosed with RA.
Selection of IVs
The selection of IVs constituted the most crucial step in the MR analysis. In this study, we strictly adhered to the standard MR protocol.
The IVs for RA were selected based on the following inclusion criteria: (i)
GWAS data for the outcomes
In this study, four lung diseases were analyzed, namely asthma, COPD, ILD, and LC. For the Asian population, the data for these four lung diseases were obtained from ebi-a-GCST90018575, ebi-a-GCST90018587, ebi-a-GCST90018643, and ebi-a-GCST90018655, respectively. The disease endpoints were defined based on the International Classification of Diseases-10 (ICD-10) classifications (https://icd.who.int/browse10/2019/en).
For the European population, the data for these four lung diseases were derived from ebi-a-GCST006862, ukb-b-20464, ebi-a-GCST90018863, and ebi-a-GCST004748, respectively. Among them, diagnosis of asthma was based on standardized questionnaires or physicians’ evaluation; COPD was defined by doctors’ diagnosis; ILD was defined based on ICD-10; and LC was diagnosed histologically based on doctors. In addition, considering the availability of subtypes for LC phenotype in European ancestry, we additionally evaluated the impact of RA on small cell LC (SCLC; “finn-b-C3_SCLC_EXALLC”) and non-SCLC (NSCLC; “finn-b-C3_LUNG_NONSMALL”).
These samples provided the fundamental data support for subsequent investigations into the relationships between RA and various outcome measures. A sufficient sample size contributed to enhancing the reliability and representativeness of the research results. Notably, there was no sample overlap between the exposure and outcome datasets from European ancestry. However, the exposure and outcome data for Asian ancestry were primarily derived from the Japanese biobank, which might induce false-positive estimates. Therefore, we performed maximum likelihood estimation to verify the observed significant associations from East Asian ancestry.
MR analysis and sensitivity analysis
To obtain reliable estimates, we utilized three MR methods, including inverse variance weighted (IVW) 21 R-Egger, and weighted median (WM). 22
Both IVW and WM were regarded as the primary analysis methods. The MR-Egger method was used as a supplementary approach to test whether pleiotropic outliers would bias the direction of the IVW and WM estimates. The IVW method is the most basic, assuming that all IVs are valid. It weights each genetic association by the inverse of its variance, yielding more reliable estimates when most IVs are valid. In this work, random-effect IVW was applied when heterogeneity was detected. The WM method can produce consistent estimates even when up to 50% of the IVs are invalid, by using a WM of the individual-SNP estimates. The MR-Egger method addresses the potential pleiotropy issue. It can account for directional pleiotropy by estimating and adjusting for the intercept in a regression model, permitting valid causal inference in the presence of some invalid IVs. In this work, causal estimation was considered statistically significant with
In addition, sensitivity analyses were also conducted, including additional complementary MR approaches (MR-PRESSO, MR-RAPS, and Contamination Mixture) aside from the above three conventional MR models, Cochran’s
If heterogeneity existed, RadialMR would be carried out to detect outliers. 23 It was designed to estimate causal effects using genetic variants. It focused on the radial structure of data in the context of multiple IVs. By leveraging the relationships between genetic instruments, exposure, and outcome, RadialMR aimed to provide more accurate and robust causal inferences. It could handle complex data structures and was useful in various fields like epidemiology and genetics. This method helped to better understand the causal links between traits and diseases, offering valuable insights for research and potential interventions. A new estimate after removing outliers would be regarded as the final estimate.
Excluding the potential bias of smoking behavior
Considering lung diseases are largely associated with tobacco intake, smoking phenotype should be considered when investigating the causal associations between RA and lung diseases. To this end, this work conducted multivariable MR (MVMR) analysis of RA with lung diseases adjusted with smoking initiation (“ieu-b-4877” for European ancestry and “bbj-a-78” for East Asian ancestry).
In addition, we manually research whether the RA exposure SNPs were associated with several GWAS traits that might influence the true associations between RA and lung diseases, including smoking behavior, forced vital capacity (FVC), and forced expiratory volume in 1 s (FEV1), mainly from Pan-UKB datasets.
Bayesian colocalization analysis
Bayesian colocalization analysis tests the posterior probability for five competing hypotheses (H0–H4) within a defined genomic region to determine if the exposure and outcome traits share a single common causal variant. The hypotheses are: H0: no association with either trait; H1: association with the exposure only; H2: association with the outcome only; H3: association with both traits, driven by two distinct causal variants; H4: association with both traits, driven by a single shared causal variant. We extracted effect size estimates and their standard errors for the exposure and outcome-associated SNPs from the respective GWAS summary statistics for the genomic regions of interest. A posterior probability for H4 (PP.H4) ⩾ 80% was considered strong evidence for colocalization, indicating that the genetic association signals for both traits are likely attributable to the same underlying causal genetic variant. In this work, we conducted colocalization using a window of 100 kb surrounding the top-SNP of RA datasets from East Asian and European ancestry.
Reverse MR analysis
Except for investing the causalities from RA to common lung diseases, this work also conducted a reverse MR analysis to evaluate the causal impact of common lung diseases on RA. For East Asian ancestry, we evaluated the effects of asthma, COPD, LC on RA using a
Statistical analysis
The analysis in this study relied on the R platform (version 4.3.2, 64-bit versions of Windows 7 and later on x86_64 chips, developed at Bell Laboratories: https://www.r-project.org/). Packages “TwoSampleMR,” “MendelianRandomization,” “RadialMR,” “forestplot,” “coloc,” and “data.table” were used in our study to conduct MR analysis and visualization.
Results
Instruments overview
The included exposure-instruments with genetic information, including sample sizes,
Causal relationship between RA and lung diseases in East Asian ancestry
In the context of East Asian ancestry, evidence derived from the IVW method indicated that RA augmented the risk of ILD and LC (Table 1). The IVW approach suggested that the OR for ILD in RA patients relative to non-RA patients was 1.29 (95% CI: 1.17–1.42;
MR estimates the association between rheumatoid arthritis and lung diseases.
COPD: chronic obstructive pulmonary disease; ILD: interstitial lung disease; IVW: inverse variance weighted; LC: lung cancer; MR: Mendelian randomization.
The IVW method was based on the random-effect model to balance potential heterogeneity.
Pre-RadialMR exploratory analysis showing significant heterogeneity with the weighted median method showing significant estimates.
MR estimates after outliers removed by RadialMR analysis.
Statistically significant estimate after Bonferroni

Forest plot showing Mendelian randomization estimates of rheumatoid arthritis on lung diseases.
To mitigate the influence exerted by heterogeneity, we employed the RadialMR method. In the MR analysis between RA and LC, outliers were identified at rs12612769, rs1557549, rs1634734, and rs9275610. After excluding these outliers, a causal relationship between RA and LC was established. After Bonferroni correction, the IVW method indicated a significant association between RA and the risk of LC (OR = 1.11, 95% CI: 1.05–1.18;
Causal relationship between RA and lung diseases in European ancestry
In the European ancestry cohort, the IVW estimate provided support for the notion that RA increased the risk of ILD with nominal significance (OR = 1.08, 95% CI: 1.02–1.16;

Scatter plots showing Mendelian randomization estimates of rheumatoid arthritis on interstitial lung disease in East Asian ancestry (a) and European ancestry (b).

Leave-one-out plots showing Mendelian randomization estimates of rheumatoid arthritis on interstitial lung disease in East Asian ancestry (a) and European ancestry (b).
Excluding the influence of smoking
For East Asian ancestry, MVMR analysis showed that RA was significantly associated with ILD when adjusting for smoking initiation (OR = 1.29, 95% CI: 1.17–1.43;
In addition, SNP pleiotropy research, mainly based on Pan-UKB datasets, showed that the RA-exposure SNPs were not associated with smoking, FEV1, or FVC (Table S8).
Colocalization analysis
Based on the two-sample MR analyses, sensitivity analyses and MVMR analyses, we identified that RA was stably associated with ILD in both ancestries. Further colocalization analysis confirmed that these causalities were not driven by common SNPs (PP.H4 = 0.43 for the East Asian ancestry; PP.H4 = 0.01 for the European ancestry; Table S9).
Reverse MR analyses
Harmonized data for reverse MR analysis was presented in Table S10 and S11. For the East Asian analysis, we did not find evidence of causal relationships from four lung diseases to RA (Table S12). While for the European ancestry, reverse MR analysis showed that ILD was associated with an increased risk of RA (OR = 1.36, 95% CI: 1.17–1.58;
Discussion
To the best of our knowledge, this study represents the maiden MR analysis exploring the causal associations between RA and four pulmonary diseases. Our results unveiled that RA augmented the risks of IL independent of smoking initiation in both European and East Asian ancestry. These revelations might have implications for clinicians to be more vigilant and enhance routine ILD screening in RA patients. In addition, the reverse MR analysis also indicated a causal impact of ILD on the risk of RA in European ancestry.
In recent years, the management paradigm for RA has experienced a paradigm shift. It has transitioned from a straightforward translation of clinical trial efficacy to patient care, now encompassing not only the management of RA but also a holistic consideration of other health aspects. Notably, with the successful application of disease-modifying antirheumatic drugs in RA treatment, the focus has broadened to overall patient well-being. 24 Consequently, our study, which aimed to decipher the causal links between RA and lung diseases, holds profound clinical significance.
ILD stood as a prevalent yet often underappreciated complication of RA, bearing significant morbidity and mortality implications.25–30 ILD can manifest at any stage during the course of RA and was often diagnosed with high-resolution computed tomography (HRCT) or histological examination. 31 The clinical trajectory of RA-ILD is highly variable.32,33 Close surveillance of ILD in RA patients was vital to ensure timely intervention with appropriate treatment strategies, thereby improving outcomes. Clinical trials have demonstrated that antifibrotic therapies can slow the decline in lung function in patients with progressive fibrosing ILDs. The management of RA-ILD patients necessitated a multidisciplinary approach, evaluating both the severity and progression of ILD and the activity of articular disease. Close cooperation between rheumatologists and pulmonologists was indispensable for optimizing patient care.
In summary, RA and ILD, LC shared the following pathogenesis- inflammatory response, immune dysregulation, and shared genetic susceptibility.
A primary mechanism potentially linking RA to ILD and LC is the chronic inflammatory state intrinsic to RA. In RA, the immune system is in a state of persistent activation, leading to the release of a profusion of pro-inflammatory cytokines such as tumor necrosis factor-alpha (TNF-α), interleukin-1 (IL-1), and interleukin-6 (IL-6). These cytokines can exert a profound influence on the lung microenvironment.
In the context of ILD, the continuous exposure of lung tissue to these pro-inflammatory cytokines can inflict damage on the alveolar epithelium and the pulmonary interstitium. For instance, TNF-α can induce apoptosis of alveolar epithelial cells, disrupt the normal architecture of the alveolar-capillary barrier, and promote fibroblast activation and proliferation. This fibroblast activation culminates in the excessive production of extracellular matrix components, ultimately giving rise to pulmonary fibrosis, a hallmark of interstitial pneumonia.34–37
Regarding LC, chronic inflammation can foster a tumor-promoting microenvironment.38,39 Inflammatory cells infiltrating the lung tissue release reactive oxygen species and reactive nitrogen species as part of the immune response. These highly reactive molecules can inflict DNA damage on normal lung cells, triggering mutations that may initiate the carcinogenic process. Moreover, pro-inflammatory cytokines can promote cell proliferation, angiogenesis, and inhibit apoptosis in transformed cells, facilitating the growth and metastasis of LC cells.
RA is accompanied by immune dysregulation, which may also contribute to the elevated risks of interstitial pneumonia and LC. In RA patients, there is an abnormal activation of T-lymphocytes and B-lymphocytes. The dysregulated T-cell subsets can secrete cytokines that disrupt the normal immune surveillance in the lungs.
For interstitial pneumonia, autoreactive T-cells may erroneously target the lung tissue, perceiving it as foreign. This autoimmune assault can lead to the destruction of lung parenchyma and the development of fibrosis. Additionally, the imbalance in B-cell function can result in the production of autoantibodies that deposit in the lung tissue, triggering an inflammatory response and further tissue damage.
In the context of LC, the impaired immune surveillance due to immune dysregulation in RA may permit cancer cells to elude the immune system.40,41 The normal immune response is designed to recognize and eliminate transformed cells. However, in RA patients, the abnormal immune cell activation and cytokine production can interfere with this process. For example, regulatory T-cells, which are over-activated in RA, can suppress the anti-tumor immune response, allowing cancer cells to proliferate and metastasize without effective control.
There may exist a shared genetic susceptibility among RA, interstitial pneumonia, and LC. Some genetic variants associated with RA may also modulate the susceptibility to lung diseases. For example, certain major histocompatibility complex alleles linked to RA may also participate in the immune response to lung-specific antigens. These genetic factors can impact the function of immune cells, cytokine production, and the regulation of inflammation in the lungs.
Genetic variants that heighten the risk of RA may also disrupt the normal repair mechanisms in the lungs. In the case of interstitial pneumonia, impaired repair of damaged lung tissue due to genetic factors can fuel the progression of fibrosis. For LC, genetic mutations associated with both RA and an increased risk of carcinogenesis may be implicated in the initiation and development of lung tumors.
Future research is warranted to comprehensively elucidate these mechanisms, which will lay the foundation for the development of more efficacious preventive and treatment strategies for these comorbid conditions.
Previously, several studies posited that RA might elevate the risk of COPD. However, our MR analysis yielded the finding that RA did not influence the occurrence of COPD in either Asian or European ancestry. Hence, there is no imperative for special preventative measures against COPD in RA patients.
Notably, though we conducted a series of analyses (including complementary MR models, sensitivity analyses, MVMR analyses, manually researching pleiotropic effects of SNPs, and Steiger direction test) to confirm the stable associations between RA and ILD, colocalization analysis failed to detect common variants driving the causalities. There might be multiple independent causal signals (allelic heterogeneity) for the exposure and the outcome. Colocalization methods typically model a single causal variant per region. When this assumption is violated, the power of colocalization analysis decreases, making it less likely to support a shared causal variant (H4), even if a causal relationship exists at the phenotypic level captured by MR. Crucially, the validity of our MR finding does not strictly depend on a positive colocalization result. Our MR analysis was based on independent, genome-wide significant instruments and was robust across multiple sensitivity methods that are resistant to certain forms of pleiotropy. This provides a consistent and robust evidence for a causal effect, albeit one with a more complex underlying genetic basis than a single shared variant.
There were several limitations of this study. Though MR provided insight into causal relationships, this study did not integrate clinical trials. Though this study revealed causal relationships in two ancestries, it did not subgroup patients into different sexes, different disease stages, etc. Future work is warranted to investigate the sex or age stratified MR estimates when corresponding genome-wide association studies (GWAS) data was available. In addition, power calculation was modest for most MR estimates in this work, which might be due to limited variance explained by SNPs or modest sample sizes in this work. Future work is warranted to validate our results using larger GWAS cohorts. Besides, we conducted MVMR analysis to correct smoking behavior by including only the smoking initiation phenotype, which was obtained from a large-scale GWAS cohort. Other smoking-related phenotypes, like cigarettes per day or lifetime smoking, were not included due to modest sample size or data use restriction. Finally, while MR benefits from inherent methodological strengths that substantially reduce confounding and provide robust evidence for causal inference between phenotypes, its findings still warrant cautious interpretation in clinical contexts, which has also been highlighted in Cai et al.’s study. 42 Indeed, as a robust tool for causal inference, MR is widely used to preliminarily explore the causal relationships between different phenotypes, and its preliminary conclusions might guide further real-world research. While our multi-method MR analyses support a causal relationship between RA and lung diseases and may offer clinically relevant insights, further validation through prospective cohort studies is needed to confirm these associations.
Conclusion
Using MR analysis, RA would increase the risk for ILD in both East Asian ancestry and European ancestry even after accounting for smoking behavior. Though the primary two-sample MR analysis detected a detrimental impact of RA on risk of LC, this effect vanished after adjusted with smoking behavior, indicating the observed unfavorable impact of RA on LC was facilitated by smoking behavior. These revelations might have implications for clinicians to be more vigilant and enhance routine ILD screening in RA patients.
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Footnotes
Acknowledgements
We would like to thank the participants join the GWAS analysis utilized in our study.
Author contributions
S.Z. and Y.L. designed the study; S.Z. and X.H. conducted major statistical analyses; M.H. and X.P. conducted visualization; S.Z. wrote the first version of the article. All the authors reviewed and approved the final version of the article.
Funding
The authors received no financial support for the research, authorship, and/or publication of this article.
Declaration of conflicting interests
The authors declared no potential conflicts of interest with respect to the research, authorship, and/or publication of this article.
Data availability statement
The datasets for this study were publicly available and could be found from the IEU consortium.
Supplemental material
Supplemental material for this article is available online.
References
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