Abstract
Introduction
Acute aortic dissection (AAD) is a life-threatening clinical entity requiring urgent surgical intervention. The peak incidence of aortic dissection is reported to occur in the sixth and seventh decades of life with 2000 new cases per year in North America and 3000 in Europe.1,2
The initiating event is an intimal tear due to congenital defects of the aortic wall, such as in Marfan syndrome (MS), Ehlers–Danlos syndrome (a heterogeneous group connective tissue disorders), idiopathic Erdheim Gsell medial necrosis, bicuspid aortic valve (the most common congenital heart disease), or even acquired intima damage caused by hypertension, thoracic trauma or other unknown mechanism.3–5 Subintima or media necrosis results in intimal tear, which eventually allows blood to enter into the aortic wall, thus leading to separation of the aortic wall layers and hence to a rapid propagation of the aortic dissection. The separation of the media and the adventitia layers of the aortic wall may lead to malperfusion of numerous organs with devastating complications.2,6
An important clinical fact is that aortic dissections occur in both aneurysmatic expanded calibre as well as in normal calibre of the aorta. The most feared complication of aortic dissection is its outward rupture, which is associated with high mortality. 7 The surgical treatment depends on the location of the initial tear and on the longitudinal propagation of the dissection. To describe dissections various classifications have been proposed, with the DeBakey and the Stanford classification more often used.8,9
When the ascending aorta is affected (Stanford type A), the mortality of untreated patients is about 36%–72% within the first 48 hours and 62%–91% within the first week.10–13 Chest pain and other symptoms of ADD are often confused with those of cardiac infarction, thus complicating the diagnosis and delaying the treatment of AAD. Therefore, a better understanding of the molecular mechanisms underlying AAD can be the first step to supporting the future development of a rapid test for monitoring patients at high risk.
Questions about the underlying mechanisms in the aorta that make it more prone to be dissected and why many patients without gene defects on
Materials and Methods
Patients' demographics.
Patients and Work Program
Samples were collected from whole aorta of 19 patients with AAD (dissection type A, mean age 61.7 ± 13.1 years), eight patients with phenotypic features of MS who demonstrated
RNA Extraction
Total RNA was isolated using standard RNA purification protocols (Trizol; Sigma Aldrich, Germany). The integrity of total RNAs was checked via the
RNA Amplification and Labelling
For hybridizations on PIQOR™ microarrays, linear amplification of RNA was performed using a modified methodology described elsewhere. 14 Amplified RNA (aRNA) samples were quantified by spectrophotometry and the quality of the samples was proofed by gel electrophoresis (Bioanalyser 2001; Agilent). One microgram of aRNA from diseased tissue of AAD versus tissue of MS was labeled by reverse transcription with Cy5 and Cy3 fluorescence, respectively. According to this study design, samples from normal aortic tissue were labeled by reverse transcription with Cy5. Labeled samples were then hybridized on PIQOR™ Immunology microarrays.
Bioinformatics Service: Re-Calculation of New Expression Ratios Based on a New Reference
In all microarray experiments the samples obtained from MS had been used as reference. To be able to compare all expression values with another control of normal aortic tissue, we labeled by reverse transcription every new reference with Cy5 and hybridized against the common MS. We performed in first microarray experiments compared AAD against MS the expression ratios of these experiments were set against the expression ratio of second microarray experiments compared normal aortic tissue against MS.
Microarray Production
Microarray production was performed as described previously. 15 Briefly, prespecified 200–400-bp fragments of selected cDNAs were generated by RT-PCR (Superscript™II; Invitrogen, Groningen, The Netherlands), cloned into pGEM¯-T Vector (Promega, Mannheim, Germany) and sequence-verified. 16 Amplified inserts (Taq PCR Master Mix; Qiagen) were purified (Qiaquick 96 PCR BioRobot Kit; Qiagen), checked on an agarose gel, and spotted four times each (0.2 ng) on treated glass slides.
Array Hybridization and Data Analysis
Hybridization, scanning and data analysis were performed as described in detail elsewhere. 12 Briefly, image capture and signal quantification of hybridized PIQOR™ microarrays were performed with the ScanArraylite (Packard Bioscience, Billerica, MA, U.S.A) and ImaGene software Version 4.1 (BioDiscovery, Los Angeles, CA, U.S.A). Local background was subtracted from the signal to obtain the net signal intensity and the ratio of Cy5/Cy3. Subsequently, the mean of the ratios of four corresponding spots representing the same cDNA was computed. For normalization, only the spots for which the fluorescent intensity in one of the two channels was at least two times the mean background intensity of all unflagged spots was used. Only the genes displaying a net signal intensity two-fold higher than the mean background were used for further analysis.
Identification of Differentially Expressed Genes
As a rule of thumb, changes in expression in the PIQOR microarray experiments of more than two-fold are considered to be reliable and significant. Thus, all genes in our lists were with log 2 ratio values equal and above 1.0 and equal and lower than –1.0. The various lists were compared and genes which appeared on all the compared lists were compiled in new sublists. This provided a condensed list of genes that contain only those genes differentially expressed in all the analysed samples.
Pathway Analysis of the Common Differentially Expressed Genes
Pathway analysis means the analysis of relationships between genes or proteins and the processes or diseases in which these genes or proteins are involved. In order to get an idea about the biological meaning of the differential expression of the common up- and downregulated genes, differentially expressed genes were subjected to biological pathway analysis.
Interactions with Fibrillin-1 Using a MedScan Search and Pathwayassist Software
A MedScan search was performed and followed by using PathwayAssist software (www.ariadnegenomics.com) to look for interactors of
Validation of the Common Differentially Expressed Genes Using qRT-PCR and Protein Analysis
Primer sequences.
Statistics
All data are presented as mean ± SD. Comparison was made between type A (acute dissection) versus Marfan syndrome and between Marfan syndrome versus control using standard Student's
Results
Inter-Experiment Correlation Analysis
The global expression profiles of microarrays were compared in a correlation analysis; the obtained inter-experiment correlation coefficients were listed. The various experiments were plotted against each other in scatter diagrams to visualize the correlation between the samples, followed by a graphical representation of the correlation values. Figure 1 demonstrated the results of five microarrays (AAD versus MS). Positive correlations are shown in shades of yellow (more intensive colour = better correlation), while anti-correlations are indicated by shades of blue.
Global inter-experiment correlations analysis. Representatively, detection of gene expression: lanes with the initials X3970160, X3970161, X3970162, X3970163 demonstrated the detection of gene expression on microarray, RNA obtained from four samples of AAD tissue hybridized against RNA obtained from MS tissue. In lane X3710104 pooled RNA of eight patients with AAD is shown.
Identification of Differentially Expressed Genes
List of 16 condensed genes which are differentially expressed in all patient samples, including the pool of RNA obtained from eight AAD patients.
In an additional approach, the mean values of the expression values of all the genes were calculated and those with an at least two-fold up-or downregulation were extracted to a new list. This method is less stringent and allows genes with missing expression values for one or more experiments to be considered for later pathway analysis. The list obtained with the latter method contained 88 genes, generated from the medians of the gene expression, which were clustered according to their biological annotations. A group of 32 genes with high significance, involved in extracellular matrix assembly and in extracellular space building was identified (shown in Table 4). The expression of genes with high significance was validated in qRT-PCR with primers listed in Table 2, and then protein analysis was performed.
Pathway Analysis of the Common Differentially Expressed Genes
A sublist of 32 genes was created from genes, whose median values were significant and above the threshold of two-fold regulation. These genes are clustering in a group assigned to ‘extracellular space.’ Nine genes, identical to those represented in Table 3, are marked in cursive.
A number of matrix metalloproteases (MMP-19, MMP-12, MMP-9) were differentially expressed in tissues obtained from patients with AAD. MMP-19 was the only matrix metalloprotease being upregulated, while MMP-12 and MMP-9 were downregulated. Furthermore, the expression levels of some collagens were reduced (COL11A1, COL1A1, COL3A1, COL1A2, COL15A1). Among the seven chemokines which were differentially expressed in the microarrays, six were downregulated in their expression. Only CCL2 was upregulated by a factor of 2 to 3 in four of the five microarrays. The other chemokines (CCL13, CCL14, CCL15, CXCL14, CCL21 and CCL19) were all downregulated in the analysed samples. In addition, IL6 was upregulated.
Interactions with Fibrillin-1 (FBN1)
Interactors of FBN1 revealed by a MedScan search using InteractionExplorer software PathwayAssist showed four genes ( Interactors of FBN1 found by a MedScan search using PathwayAssist software. The genes coding for the proteins with the green halos were differentially expressed in the current microarray experiment.
We used the InteractionExplorer software again to check all the differentially expressed genes for further analysis to study interactions and molecular networks. Among the regulators of the differentially expressed genes certain growth factors were identified; PGF, EGF, TGFB1, HGF and platelet-derived growth factor.
Validation of the Common Differentially Expressed Genes Using qRT-PCR and Protein Analysis
qRT-PCR, after three repeats, revealed a minimum three-fold downregulation of FBLN1 (0.5 ± 0.4 vs. 6.1 ± 2.3 fold, Validation of four differentially expressed genes using qRT-PCR is presented in 3A; those four genes are directly interact in the pathway analysis with FBN1. They are involved in ECM development. Representatively, in 3B) a Western blot demonstrated detection of 
Discussion
Despite its high mortality rate, acute aortic dissection (AAD) presents a relatively unclarified entity of the arterial system. It was first described in the eighteenth century during autopsy by Dr. Nicholls, physician to King George II. 18 Even today AAD remains a disease with high mortality rates, with about 2000 new cases in North America and 3000 new cases in Europe every year. It requires urgent clinical intervention; untreated cases have a mortality rate reaching about 36%–72% within the first 48 hours (classification after Stanford type A). 9
In their study Weis-Müller et al described the molecular features underlying the pathogenesis of AAD as obscure. 10 They compared tissue from dissected aorta with normal aortic tissue using microarrays and found some indications of AAD differentially expressed genes; 19 however, the pathway of these differentially expressed genes is still to be defined. Also, the underlying mechanisms which make the aorta more prone to be dissected remain unclarified. In this study we investigated whether dissected aortic tissues present significant similarities in their gene expression pattern. We generated 88 differentially expressed genes in tissue obtained from patients with AAD compared with MS by using microarrays, and clustered them according to their biological annotation. We found that most of the genes identified as differentially expressed are assigned to ‘extracellular space’. Examination of these clusters revealed proteins involved in extracellular matrix assembly or maintenance, as well as cell adhesion and signalling.
A number of matrix metalloproteases (MMP-19, MMP-12, MMP-9) was differentially expressed in AAD patients. MMP-19 was upregulated and MMP-12 and MMP-9 were downregulated. The expression levels of some collagens were reduced (COL11A1, COL1A1, COL3A1, COL1A2, COL15A1). Our results suggest that the extracellular matrix was weakened and cell adhesion might be reduced in affected patients.
Seven chemokines were identified; six were downregulated in their expression. Only CCL2 was upregulated, by a factor of 2 to 3. CCL2, a potent leukocyte chemoattractant, is known to induce macrophage recruitment and activation involved in diseases such as psoriasis, rheumatoid arthritis and arteriosclerosis.20–22 In addition, IL6 was upregulated, indicating that the tissues of the affected patients presented an inflammatory response in AAD. Another interesting gene that we found (data published elsewhere) with high expressed in AAD (not included in the PIQOR microarray) is the high mobility group AT-hook 2 (
The investigated AAD patients presented neither clinical manifestation nor mutations of
Therefore, a downregulation of fibulin-1 expression may contribute to the development of aortic dissection, either by weakening the aortic connective tissue or by altering the cellular signal transduction. Decorin is considered as another candidate gene for Marfan syndrome.
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It is interesting to see
Dsiclosure
The authors report no conflicts of interest.
